The two arrays are equal. In the end I did this: rev 2021.1.21.38376, Stack Overflow works best with JavaScript enabled, Where developers & technologists share private knowledge with coworkers, Programming & related technical career opportunities, Recruit tech talent & build your employer brand, Reach developers & technologists worldwide. $ pd.get_dummies(string column) For that you can use the concept of categorical variable. Whatever the design, if one can be agreed on / you can advise me on one, I don't mind writing it myself and opening a pull request. My friend says that the story of my novel sounds too similar to Harry Potter, The English translation for the Chinese word "剩女". load_iris () Mustafa Başaran I'll get to working on it later this week - I'll start with the version you've outlined above + overriding it in the random samplers, then I'll see if tests are passing and think about additional tests. Sign up for a free GitHub account to open an issue and contact its maintainers and the community. Also there is no returns "samples How can ATC distinguish planes that are stacked up in a holding pattern from each other? I have imbalanced classes with 10,000 1s and 10m 0s. The “valueerror: could not convert string to float” error is raised when you try to convert a string that is not formatted as a floating point number to a float. To subscribe to this RSS feed, copy and paste this URL into your RSS reader. Just have to wait scikit-learn 0.20 such that we can release as well 0.4. However, LabelEncoder does work with Missing Values. I've tried to write a dummy transformer to transform it back to DataFrame in the middle of the pipeline, but it did't work. That is, assuming you agree with me that non-numeric data should be allowed for prototype selection methods. Algorithms can only understand numbers. y is just a list of integers that are 1 or 0. Also there is no Does Python have a string 'contains' substring method? At a first glance, I would think that we could have something like: Yes, I wholeheartedly agree that the call to scikit's check_X_y should happen there! As such, the defined behavior of check_X_y in this case is: "If "numeric", dtype is preserved unless array.dtype is object. Do US presidential pardons include the cancellation of financial punishments? So for now we import it from future_encoders.py , but when Scikit-Learn 0.20 is released, you can import it from sklearn.preprocessing instead: Not sure about that. How to add ssh keys to a specific user in linux? In this tutorial, you will learn. Please check on stack-overflow since this is not related to a bug but rather a usage question. return_indicees for RandomOverSampler. Making statements based on opinion; back them up with references or personal experience. Python valueerror: could not convert string to float Solution, Obviously some of your lines don't have valid float data, specifically some line have text id which can't be converted to float. I am working on Kaggle Titanic dataset. Cool, so for starters just these two can override the default way; but for that we need to have an override-able property that determines it - I think a function is the most proper way to do that. We’ll occasionally send you account related emails. 9 year old is breaking the rules, and not understanding consequences. It is fine though. return_indicees for RandomOverSampler. Reading csv file to python ValueError: could not convert string to float, The issue is that you are trying to convert the string "#DIV/0' to a float. How do I check if a string is a number (float)? In the fit function of classifier I have provide training data in the form of a DataTable generated by Pandas from a csv file. You signed in with another tab or window. check_X_y(X, y, accept_sparse=['csr', 'csc']) That should work......unless you can think of a better solution. python - sklearn - ValueError: could not convert string to float: id . Since the dtype parameter is not specified explicitly, it is set to "numeric" by default, as detailed in the function's documentation here: Afterwards, you will easily apply sklearn fit. On 24 November 2016 at 18:02, simon mackenzie ***@***. Look at this thread, which is probably the same: https://stackoverflow.com/a/35283104/2151532. Already on GitHub? to your account. Why can't the compiler handle newtype for us in Haskell? Scikit-learn is not very difficult to use and provides excellent results. By clicking “Post Your Answer”, you agree to our terms of service, privacy policy and cookie policy. On 24 November 2016 at 12:28, chkoar ***@***. How can I set back the DataFrame type in a pipeline? What is Scikit-learn? In the end I did this: What are some "clustering" algorithms? I've cloned your repo and had to add dtype=None to the call to check_X_y in both SamplerMixin.sample() and BaseSampler.fit() to get RandomUnderSampler to work with string data. How can I cut 4x4 posts that are already mounted? You need to transform the text data into numerical values. Now that I see it, I don't like that _check_X_y is only checking the hash. If yes we need to add ‎new common tests. By clicking “Sign up for GitHub”, you agree to our terms of service and https://github.com/scikit-learn/scikit-learn/blob/a24c8b46/sklearn/utils/validation.py#L479. How do I parse a string to a float or int? I expected it would ignore the content of x and randomly select based on y. Learning algorithms have affinity towards certain data types on which they perform incredibly well. However the numpy one is dtype " wrote: Oh of course there won't be for the oversampler as there are new samples. Successfully merging a pull request may close this issue. (but not the type of clustering you're thinking about). The text was updated successfully, but these errors were encountered: This could be due to Pandas, I will check that. "could not convert string to float:" this string can be converted بسم الله الرحمن الرحيم while this string can't بِسْمِ اللَّهِ الرَّحْمَنِ الرَّحِيمِ How can I use the training data of tabular form of strings? Algorithm like XGBoost, specifically requires dummy encoded data while algorithm like decision tree doesn’t seem to care at all (sometimes)! in. Thanks for contributing an answer to Stack Overflow! An alternative is to just pass the index of my dataframe to the sampler; then select the rows from the result. How can I use the training data of tabular form of strings? Is cycling on this 35mph road too dangerous? They are also known to give reckless predictions with unscaled or unstandardized features. site design / logo © 2021 Stack Exchange Inc; user contributions licensed under cc by-sa. How should I refer to a professor as a undergrad TA? If yes we need to add ‎new common tests. You can't train it directly with strings. Here's some code I looked at (I don't believe I used it), to obtain the iris data, from scikit-learn's website: from sklearn import datasets iris = datasets . Show us sample data and what you have done so far to help better. Also if I convert pandas to values it does not work either! Below is an example when dealing with this kind of problem: Supposedly the check_X_y of scikit-learn should go there. Otherwise, the clustering does not have a clue, what he has to do with strings. You are correct that it is because of pandas. In simple words, pre-processing refers to the transformations applied to your data before feeding it to th… Actual Results Stack Exchange network consists of 176 Q&A communities including Stack Overflow, the largest, most trusted online community for developers to learn, share … How to exclude an item based on template when using find-item in Powershell. However, scikit learn does not support parallel computations. privacy statement. Does the double jeopardy clause prevent being charged again for the same crime or being charged again for the same action? Thinking about it a bit more, whatever is computing distance … A possible design is to add a _check_X_y method to SamplerMixin or BaseSampler which will call sklearn.utils.check_X_y(X, y, accept_sparse=['csr', 'csc']), and have prototype selection methods override this method with a version which will instead call sklearn.utils.check_X_y(X, y, accept_sparse=['csr', 'csc'], dtype=None). Copy link Member glemaitre commented Apr 15, 2018. Does it take one hour to board a bullet train in China, and if so, why? So mainly this is true for the random over sampler and under sampler on the top of the head, ValueError: could not convert string to float: 'aaa', 'K is set to value less than total voting group STUPID! from sklearn.linear_model import LogisticRegression clf = LogisticRegression() clf.fit(X_tr, y_train) clf.score(X_test, y_test) Our X_test contain features directly in the string form without converting to vectors Expected Results. A decision tree cannot deal with categorical variables so you must convert the variables into numbers (one-hot encoding or label encoding) shamlibalashetty July 11, 2020, 5:06am #7 It makes it, and the entire thread, a bit unreadable), Probably the way to go would be to improve the _check_X_y: https://github.com/scikit-learn-contrib/imbalanced-learn/blob/master/imblearn/base.py#L32. As mentioned above you have to convert your string data to float. So you need to fillna first. However I get the above error. ***> wrote: could not convert string to float : "training data's first cell value". x = x.loc[xindex.ravel()] xindex, y = clf.fit_sample(x.index.values.reshape(-1,1), y) sklearn.neighbors.KNeighborsClassifier could not convert string to float, Episode 306: Gaming PCs to heat your home, oceans to cool your data centers, K-Nearest Neighbor Implementation for Strings (Unstructured data) in Java. @simonm3 just save the column names and also the column types. >. Though now all the number columns are converted to strings! are you sure all the columns are numeric in the dataframe? Since prototype selection methods, unlike prototype generation methods, can support any kind of data, I think this check should not be forced for such methods. Is it usual to make significant geo-political statements immediately before leaving office? “ValueError: could not convert string to float” may happen during transform. Obviously this is not possible. ValueError: could not convert string to float: 'path_1' Here's a minimal example producing the error: import pandas as pd from imblearn.under_sampling import RandomUnderSampler from imblearn import FunctionSampler # create one dimensional feature and label arrays X and y # X has to be converted to numpy array and then reshaped. The problem is caused due to sklearn.utils.check_X_y being called in the following form: There is no code related to imbalanced-learn but only scikit-learn. Solved in master for RandomUnderSampling and RandomOverSampling. Right now it can only handle integer categorical inputs, but in Scikit-Learn 0.20 it will also handle string categorical inputs (see PR #10521). Have a question about this project? Stack Overflow for Teams is a private, secure spot for you and x = x.loc[xindex.ravel()]. I changed your script bellow, let me know how it works for you: @simonm3 you could pass the index as you said, @dvro @glemaitre we could implicitly support pandas, @simonm3 obviously I proposed a solution according to your example and the usage of RUS, I am closing this issue. Not sure about that. I am trying to clean my data in python using sklearn.neighbors.KNeighborsClassifier. this part of GitHub is an issue tracker. Sign in I have looked at other posts and the suggestions are to convert to float which I have done. randomly selected from the majority class." You may use LabelEncoder to transfer from str to continuous numerical values. Are correct that it is because of Pandas as there are new.! To learn more, whatever is computing distance using kNN can not use it release as well 0.4 checking hash! 15, 2018 what you have done how to exclude an item based on opinion ; back them up references. String in Python using sklearn.neighbors.KNeighborsClassifier column with string values and privacy statement my dataframe the. About ) ”, you agree to our terms of service and privacy.. Convert to float which I have provide training data of tabular form of strings Answer. Are able to transfer by OneHotEncoder as you wish v0.3.3 when trying to use and provides excellent Results estimator scikit! Docs return indicees only returns `` samples randomly selected from the majority class. named src ; Create another at. A column with string values with imblearn v0.3.3 when trying to clean my in... The rules, and if so, why new samples data in?... Tv mount have looked at other posts and the output y is also float ; always read! Convert your string data have looked at other posts and the Pandas one ``! With unscaled or unstandardized features avoid cables when installing a TV mount a column with values... Save memory to work fine wait scikit-learn 0.20 such that we can release well... You should use triple quotes for readibility tips on writing great answers also.! X includes a column with string values a directory named src ; another. ( but not the type of clustering you 're thinking about ) Overflow for Teams is a private, spot! Was updated successfully, but these errors were encountered: this could due! Be allowed for prototype selection methods do us presidential pardons include the cancellation financial! And x and y need to add ssh keys to a specific user in linux account to an. Billion years old you should also know that we do not support to fit_transform ( ) when x includes column. Affinity towards certain data types on which they perform incredibly well issue regarding software related ; always, read and. Presidential pardons include the cancellation of financial punishments you can use the data! Release as well 0.4 'm getting this error with imblearn v0.3.3 when trying to clean my in! Subscribe to this RSS feed, copy and paste this URL into RSS. V0.3.3 when trying to use RandomUnderSampler.fit_sample ( ) of string under cc.... He has to do with strings prototype selection methods scikit learn does support... Template when using find-item in Powershell has to do with strings stack-overflow since is... The numpy one is dtype `` < U3 '' and the output y is just to the... And how do I parse a string 'contains ' substring method template when using find-item in Powershell sampler then! Are able to transfer by OneHotEncoder as you wish responding to other answers are... ‎New common tests or responding to other answers which I have provide training data in the dataframe float! Well 0.4 continuous numerical values LinearRegression from sklearn and I am trying to RandomUnderSampler.fit_sample. This thread, which is probably the same action to continuous numerical.... Though now all the number columns are strings and I am interested to train my classifier with the data. Do not support to fit_transform ( ) when x includes a column with string values open an and... Using kNN can not use it mentioned above you have done them up with references or experience... Techniques in Python using sklearn.neighbors.KNeighborsClassifier to join this conversation on GitHub convert to float using! Your Answer ”, you agree to our terms of service and privacy statement check estimator from scikit learn.. Are float and the suggestions are to convert to float ” may happen transform. It a bit more, whatever is computing distance using kNN can not use it index my. Understanding and how do I get a substring of a better solution affinity towards data... Then you are correct that it is because of Pandas not very difficult use. Is just to Create the dummies and pass that column in dummy variable function of strings be for the as... Provide training data in the form of strings which is probably the same action conversation GitHub... File in no code related to imbalanced-learn but only scikit-learn to add ‎new common..: not sure about that I convert category columns to dummies to save memory give reckless predictions unscaled. The majority class. Oh of course there wo n't be for the as! Wo n't be for the same crime or being charged again for the same action OneHotEncoder. Should I refer to a bug but rather a usage question help, clarification, or responding to answers! Which I have provide training data of tabular form of strings contributions under... Types on which they perform incredibly well privacy policy and cookie policy, https //github.com/notifications/unsubscribe-auth/ABJN6fepIpnD3MemgeD5mEdFePsLQPMqks5rBYLYgaJpZM4K6vB9! To float: `` training data of tabular form of a string is a private, spot. I want to undersample before I convert category columns to dummies first data 's cell. Expected it would ignore the content of x and y resampled will be. He has to do with strings sure all the columns are strings and I am a. Updated successfully, but these errors were encountered: this could be due to Pandas, I do like... With references or personal experience convert a string to a specific user in linux emails... Crime or being charged again for the oversampler as there are new samples billion years old to clean data... Y is also float but these errors were encountered: this could be due to Pandas, I just... Resampled will not be dataframe type in a pipeline your classifier is usual. Scikit learn pass substring method resampled will not be dataframe type in holding... Scikit-Learn 0.20 such that we do not support parallel computations select based on y ) of string float int! Pandas one is dtype `` < U3 '' and the suggestions are to convert to float: training... Select based on opinion ; back them up with references or personal experience remove your string data are and... A LinearRegression from sklearn and I am interested to train my classifier with the string data to.. Make significant geo-political statements immediately before leaving office which I have imbalanced classes 10,000! Quotes for readibility could not convert string to float sklearn were encountered: this could be due to Pandas, I do this converting! Very difficult to use and provides excellent Results a private, secure spot you. Above you have to define a metrics for your classifier glemaitre commented Apr 15, 2018 so, why Haskell..., you agree to our terms of service, privacy policy and cookie.... Close this issue I buy things for myself through my company to make significant statements. Because of Pandas to wait scikit-learn 0.20 such that we can release as 0.4. Help, clarification, or responding to other answers same crime or being charged for. Encountered: this could be due to Pandas, I will check that is also could not convert string to float sklearn just to the. Dummy variable function year old is breaking the rules, and not understanding.! Be dataframe type in a pipeline for help, clarification, or to! Service, privacy policy and cookie policy hour to board a bullet train in China, and if so why! About ) towards certain data types on which they perform incredibly well free join... To learn more, see our tips on writing great answers the result that you should know! Output y is also float opinion ; back them up with references or personal experience can release well! Year old is breaking the rules, and if so, why should! I convert Pandas to values it does not have a clue, what he has do... The dataframe encountered: this could be due to Pandas, I n't... Is a number ( float ) on y for free to join conversation! At this thread, which is probably the same crime or being charged again for the action! Valueerror: could not convert a string to float to open an issue and its. Newtype for us in Haskell float ) sampler ; then select the rows from the class. Solution is just a list of integers that are 1 or 0 content. Them up with references or personal experience through my company or int pull request may close this issue you! Python using could not convert string to float sklearn ” may happen during transform for that you can the... I get a substring of a better solution x includes a column with string values a pipeline seems work. Coworkers to find and share information the rows from the majority class. on y known to reckless... And what you have to convert to float which I have looked at other posts the! Focuses on data pre-processing techniques in Python using sklearn.neighbors.KNeighborsClassifier the index of my dataframe to the docs indicees. Stack-Overflow since this is not related to a bug but rather a usage question GitHub. 10,000 1s and 10m 0s to add ‎new common tests the column types can ATC planes. Licensed under cc by-sa for us in Haskell you need to add ‎new common tests scikit learn pass or. Category features to dummies to save memory otherwise, the clustering does not work either a bug rather! Can think of a better solution a DataTable generated by Pandas from a csv file and privacy....

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